Split reads

Splitting fastq reads using the dmux output file

Split basecalled fastq data

please note that you can filter your output.tsv based on confidence score if you prefer to increase accuracy at the cost of recovery

python3 deeplexicon.py split -i output.tsv -q combined.fastq -o dmux_folder/ -s sample_name

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Split mapped reads (.paf) for use in training

python3 deeplexicon.py split --train -i mapped.paf -o split_train_output/ -->