Extra Squiggle tools

These tools are extensions or modified versions of SquiggleKit.

Extract squggles from fast5 files

Equivalent to SquigglePull

python3 deeplexicon.py squig -p /path/to/fast5s/ > squiggles.tsv

Segment squiggles from squiggle.tsv

python3 deeplexicon.py squig -s squiggle.tsv > segments.tsv