Welcome to SquiggleKit Docs
SquiggleKit is a toolkit for accessing and manipulating nanopore signal data. It has also been designed to act as an introduction to the data files produced by Oxford Nanopore Technology sequencing devices.
....Large update in progress....
||Fetches fast5 files given a filtered input list|
||Extracts event or raw signal from data files|
||Visualisation tool for signal data|
||Finds adapter stall, and homopolymer regions|
||Finds nucleotide sequence motifs in signal, i.e.“Ctrl+F”|
Getting help with SquiggleKit
Created and maintained by James Ferguson from Genomic Technologies, Kinghorn Centre for Clinical Genomics, Garvan Institute, Sydney Australia.